PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QV5DJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 732aa    MW: 78974.8 Da    PI: 5.5105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QV5DJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16463509455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Aradu.QV5DJ 463 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 509
                  6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-17455513No hitNo description
SuperFamilySSF474599.68E-21456520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-21456517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MPLYELYRLS REKLDEEING TRATDQSRSS SPEKDFFELI WENGNILTTQ GQSSRAKKSP  60
PRRSLPSHCL PSHSPKGRDR DAGYVNNPRV GKSGDLDTGL NEISMSVPST EVDLGHDDDV  120
IPWLDYTMDG SLQNEYGSNF LHELSGVTDQ DLPSNHFSLV DKSSGNQVFR DSHKNSAEQS  180
NFSSVSSTGV DETTRPKAST VESYLPSSFI SVRPRVSDVT ANNTSNAMLH PPVTEIPSSS  240
SDFSSLKMQK QDQVIPSNGS SVMNFSHFAR PAAIVRANLQ NIGLKSVSSS TRSENVESMN  300
KGAVVPSSNL PESTLADSCS ECPKVLMGNN EKAVEQSRDD LKLLESKSLE QNIAGSKQLD  360
PTCKEKAIKI DQTSNRVLGE TATNTQIAAE RSTELVVASS SVGSGNCADR GSDDPIQNLK  420
RKNRDTEDSE WHSDDVEEES VGVKKAAAGR GASGSKRSRA AEVHNLSERR RRDRINEKMR  480
ALQELIPNCN KVDKASMLDE AIEYLKTLQL QVQMMSMGAG LYMHPMMLPH GMQHMHAPHL  540
APFSPMAYGM QMGLGMGYGM AMPDMNGVSS RFPMVQVPQM QGTHVPVAQM SGPTAMVRSN  600
TQGFGVPGQG FPLPLPRAPL FPFSGGPVMN SSSALGLRPC GTTGLSQTAD LASTSGLKDP  660
SPNTDSLVKQ STGGGGCDST SQMPIQCEAA ATTVGFEQSS MVHNSSHTSE ANDSGTLNPD  720
KEDNNLVTGY DD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939568.10.0PREDICTED: transcription factor PIF3-like isoform X2
TrEMBLA0A0B2R1U00.0A0A0B2R1U0_GLYSO; Transcription factor PIF3
STRINGGLYMA20G22291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-61phytochrome interacting factor 3